Students and
Postdoctoral Scholars
Postdoctoral
Scholars
Dr.
Caroline Tuit. Trace metals in microbial physiology and ecology. 2003-present.
Dr. Andrew Allen. Molecular biology of nitrogen uptake by phytoplankton.
2002-present.
Dr. Chris Francis.
Diversity and expression of nitrite reductase genes in a permanently
ice-covered Antarctic Lake. 2001-2003.
Dr. Gaspar
Taroncher-Oldenburg. Functional gene chips for analysis of microbial
nitrogen cycling. 2000-2002.
Dr. Amal Jayakumar.
Biogeochemistry of nitrogen cycling in oxygen minimum zones. 2000-present.
Dr. Bongkeun
Song. Molecular biology of nitrogen uptake by phytoplankton; functional
genes in chlorobenzoate degrading bacteria. 2000-present.
Dr. Darryl
Martino. Fate of nitrate in Monterey Bay; Diversity of isolates,
genes, and enzymes in denitrification. 1998-2000.
Dr. Deborah
Bronk. Mechanisms and rates of dissolved organic nitrogen production
in the surface layer of the ocean. 1992-1994
Dr. Dennis
Hansell. DOC and DON concentrations in the ocean investigated using
high temperature catalytic oxidation. 1989-1991
Thesis Advisor,
Ph.D. Students
Greg
O'Mullan. Biocomplexity of microbial nitrogen cycling. EEB, Princeton,
2000-present.
Karen Casciotti.
Production of N2O by nitrifying bacteria; genetics of N2O production.
Geosciences, Princeton, 1998-present.
Mary Voytek.
Relative abundance and species diversity of autotrophic ammonia-oxidizing
bacteria in aquatic systems. PhD., Biology; UCSC 1996
Lee Kerkhof.
Developing a species-specific growth rate assay for the marine bacterium,
Pseudomonas perfectomarina. Ph.D., Oceanography-UCSD, 1991
Thesis Advisor,
Marine Sciences Masters Program Students
Donald
G. Bard. An immunomagnetic bead method to assess the in situ productivity
of the marine bacterium, Pseudomonas stutzeri. M.S., 1995
Mary E. Hogan.
Acclimation of a marine microbial sediment community to simulated in
situ exposure of 2,4-dichlorohenoxyacetic acid. M.S., 1995
Deborah B.
Golet. Small scale vertical distribution of denitrification and benzoate
degradation in intertidal sediments. M.S., 1997
Neil E. Harrington.
Effect of pesticides on nitrification in estuarine sediments. 1996-1999
Icarus Solem.
Diversity in nitrifying bacteria in marine sediments. 1997-2000
Thesis Advisor,
Biology Masters Program Students
Robert
E. Harding. Detection of the nitrite reductase gene in samples from the
Eastern Tropical North Pacific denitrification regime. 1998
Brandon Carter.
Development of DNA probes for nitrate reductase in marine phytoplankton.
1997-1999
Senior Theses
Advisor (date thesis completed)
Gabriela
Tobal. The Effect of Nitrous Oxide on Nitrate Reductase Activity in the
Process of Denitrification in Pseudomonas perfectomarina. Spring 1991
Francine A.
Stanton. Construction and Applications of Xyl E Probe for Detection
of TOL+ Bacteria Strains in the Santa Cruz Harbor. Spring 1991
Cindy Smith
MacConnell. The Diversity of Luminescent Bacterial Isolates from the
Monterey Bay, Characterized through Nutritional Capabilities and Restriction
Fragment Length Polymorphism. Spring 1991
Lara Hansen.
The Effect of UVB Radiation on Pseudomonas perfectomarina in Simulated
Surface Waters of Monterey Bay. Fall 1991
Christina De
La Rocha. Tannin Tolerance in Bacteria isolated from the Guts of Herbivorous
Marine Invertegbrates and Fish. Spring 1992
Chris Francis.
Quantitative Hybridization Method for Detection and Enumeration of the
xylE Gene in a Microbial Mat Community. Spring 1994
Alisa Kirk.
Depth Profile of Plasmid DNA Extracted from the Microbial Mats of Elkhorn
Slough. Spring 1994
Jeremy Factor.
Detection of ammonia monooxygenase and methane monooxygenase genes using
the PCR. Spring 1997
L.C. Gorham.
Endosulfan Residue in Sediments of Elkhorn Slough. Spring 1997
Caroline Jenkins.
Diversity of nitrite reductase genes in denitrifying bacteria. 1998
Erin Osborne.
Detection of the tfdB gene (for 2,4-dichlorophenoxyacetic acid degradation)
in sediments by quantitative hybridization. 1998
Kiersten Ballard.
Sequence diversity of ammonia monooxygenase genes in nitrifying bacteria.
1998.
Erin Griner.
Optimization of gene microarray hybridization for analysis of functional
genes in the Nitrogen Cycle. 2002.
Independent Study
Advisor
Kristy
Paterson. Estimating Bacteial Production in Southern California Bight
from the Simultaneous Incorporation of Thymidine and Leucine. Fall 1992
Jan Purl. A
Study of Zooplankton Fecal Pellet Contents as an Indicator of Variation
in Diet. Spring 1997
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